YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8163724
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSNHERRM RYSIRKFSVG VASVAVASLF MGSVVHATEK EGSTQAATSF NRGNGSQAEQ  60
   61 REELDSERDK ARKEVEEYVK KIVGESYAKS TKKRHTNTVA LVNELNNIKN EYLNKIVEST 120
  121 SESQLQILMM ESRSKVDEAV SKFEKDSSSS SSSDSSTKPE TPQPENPEHQ KPTTPAPDTK 180
  181 PSPQPEGKKP SVPDIYPGIE KAKLAVATYM SKILDDIQKH RQIVALIKEL DELKKQALSE 240
  241 IDNVNTKVEI ENTVHKIFAD MDAVVTKFKK GLTQDTPKEP GNKKPSAPKT GMQPSPQPEV 300
  301 KPQPKNQNQR LNRNQKNQNQ RLNRNLEKPK PEVKPQPEKP KPEVKPQPEK PKPEVKPQPE 360
  361 KPKPEVKPQP EKPKPEVKPQ PEKPKPEVNP QPEKPKPEVK PQPEKPKPEV KPQPEKPKPE 420
  421 VKPQPEKPKP EVKPQPEKPK PEVKPQPEKP KPEVKPQPEK PKPEVKPQPE KPKPEVKPQP 480
  481 EKPKPEVKPQ PEKPKPEVKP QPEKPKPDNS KPQADDKKPS TTNNLSKDKQ PSNQASTNEK 540
  541 ATNKPKKSLP STGSISNLAL EIAGLLTLAG ATILAKKRMK

Type	Start	End	Confidence
Signal Peptide	1	37	0.92
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	557	0.99
Transmembrane Helix	558	575	0.84
Cytoplasmic	576	580	0.78