YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9845483
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSNYERKM CYSIRKFSIG VASVAVASLV MGSVVHATEN EGTTQAPTSS NRGNESQAEQ  60
   61 RRELDLERDK VKKEVREYKE KKVKELYSKS TKSRHKKTVD IVNKLQNINN EYLNKIIQST 120
  121 STYEELQKLM MESQSEVDKA VSEFEKDLSS SSSSGSSTEP EASDTAKPNK PTELEKKVAE 180
  181 AQQKVEEAEK KAKDQKEEDH RNYPTITYKT LELEIAEFDV EVKEAELELV KVKAKESRDE 240
  241 KKIKQAEAEV ESKQAEATRL KKIKTDRKKA EEEAKLKEAV EKNAATSEQG KPKRRVKRRA 300
  301 LGEQATPDKK DYFEKDFRPA FNKNRQMVAI QESLNKLDGE TKTVPDGAKL TGEAGNAYNE 360
  361 VRDYAIKVVS ENKKLLSQTA VTMDELAMQL TKLNDAMSKL REAKAKLVPE VKPQPENPEH 420
  421 QRPTTPAPDT KPIPQPEGKK PSVPDINQEK EKAKLAVATY MSKILDDIQK HHLQKEKHRQ 480
  481 IVALIKELDE FKKQALSEID NVNTKVEIEN TVHKIFADMD AVVTKFKKGL TQDTPKEPDN 540
  541 KKPSAPKPGM QPSPQPEGKK PSVPAQPGTE DKKPSAPKPG MQPSPQPEGK KPSVPAQPGT 600
  601 EDKKPSAPKP DMQPSPQPEG KKPSVPAQPG TEDKKPSAPK PGMQPSPQPE GKKPSVPAQP 660
  661 GTEDKKPSAP KPDMQPSPQP EGKKPSVPAQ PGTEDKKPSA PKPDMQPSPQ PEGKKPSVPE 720
  721 INQEKEKAKL AVATEKKLPS TGVASNLVLE IIGLLGLIGT SFIAMKRRK

Type	Start	End	Confidence
Signal Peptide	1	37	0.86
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	742	0.99
Transmembrane Helix	743	765	0.82
Cytoplasmic	766	769	0.88