YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8163672
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASKSERKV HYSIRKFSIG VASVAVASLV MGSVVHATEN EGSTQAATSS NMANKSQTEQ  60
   61 GEINIERDKA KTAVSEYKEK KVSEIYTKLE RDRHKDTVDL VNKLQEIKNE YLNKIVESTS 120
  121 TIEIQGLITT SRSKLDEAVS KYKKAPSSSS SSGSSTKPEP ETSKPEVKPE PETPKPEVKP 180
  181 EPGTPKPEVK PEPETPKPEV KPELETPKPE VKPEPETPKP EVKPEPETPK PEVKPEPETP 240
  241 KPEVKPELET PKPEVKPELE TPKPEVKPEP ETPKPEVKPE LETPKPEVKP EPETPKPEVK 300
  301 PELETPKPEV KPEPETPKPE VKPELETPKP EVKPEPETPK PEVKPEPETP KPEVKPEPET 360
  361 PKPEVKPEPE TPKPEVKPEP ETPKPEVKPE PETPKPEVKP EPETPKPEVK PEPETPKPEV 420
  421 KPDNSKPQAD DKKPSTPNNL SKDKQSSNQA STNENKKQGP ATNKPKKSLP STGSISNLAL 480
  481 EIAGLLTLAG ATILAKKRMK

Type	Start	End	Confidence
Signal Peptide	1	37	0.95
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	477	0.99
Transmembrane Helix	478	495	0.84
Cytoplasmic	496	500	0.78