YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8163634
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASKSERKV HYSIRKFSIG VASVAVASLV MGSVVHATEN EGSTQAATFS NMANKSQTEQ  60
   61 GEINIERDKA KTAVSEYKEK KVSEIYTKLE RDRHKDTVDL VNKLQEIKNE YLNKIVESTS 120
  121 KIEIQGLITT SRSKLDEAVS KYKKAPSSSS SSGSSTKPET PQPETPKPEV KPEPETPKPE 180
  181 VKPEPEKPKP EVKPEPETPK PEVKPELETP KPEVKPEPET PKPEVKPEPE TPKPEVKPEP 240
  241 ETPKPEVKPE LETPKPEVKP ELETPKPEVK PEPETPKPEV KPELETPKPE VKPEPETPKP 300
  301 EVKPELETPK PEVKPEPETP KPEVKPELET PKPEVKPEPE TPKPEVKPEP ETPKPEVKPE 360
  361 PETPKPEVKP ELETPKPEVK PELETPKPEV KPEPETPKPE VKPELETPKP EVKPELETPK 420
  421 PEVKPEPETP KPEVKPEPET PKPEVKPEPE TPKPEVKPDN SKPQADDKKP STPNNLSKDK 480
  481 QSSNQASTNE NKKQGPATNK PKKSLPSTGS ISNLALEIAG LLTLAGATIL AKKRMK

Type	Start	End	Confidence
Signal Peptide	1	37	0.95
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	513	0.99
Transmembrane Helix	514	531	0.84
Cytoplasmic	532	536	0.78