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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125583410, gi...
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSPRRRNG LLRDQVQLVK RKDTNRYEIV RFPDPLSFEK GFFVMIRACQ LLVQHNEGMI  60
   61 FVGVAGPSGA GKTVFTEKVL NFMPGVAVIS MDNYNDASRI VDGNFDDPRL TDYDTLLENI 120
  121 HGLKEGRSVQ VPIYDFKMSC RTGYRTVDVP SSRIVIIEGI YALSEKLRSV LDLRVSVTGG 180
  181 VHFDLVKRVL RDIQRAGQEP EEIIHQISET VYPMYKAFIE PDLQTAHIKI INKFNPFSGF 240
  241 QNPMYILKSP RTITPTDIKV ALGEDHTESI EETYDIYLLP PGEDPESCQS YLRMRNREGK 300
  301 YNLMFEEWVT DNPFIISPRI TFEVSVRLLG GLMALGYTIA AILKRKSRVF SDGKATVKID 360
  361 WLEQLNRNYI QVQGRDRNHV KFVAEKLGLD GSYIPRTYIE QIQLEKLIND VMALPEDLKT 420
  421 KLSIDDELVS SPKEALSRVS ADKRNKHLKS GLSHSYSTHG DKNIVKLSKL TETNRRFGSG 480
  481 RAPEPPAINQ GAITQLSEQI STLNERMDEF TSRVEELNCK FAIKKSSTSQ QNLALPNETC 540
  541 NGSAPTNLFV SHLGNGTLIP HSSSSNQLLK ESPIVDEINA ISRGQRQVIH QLDNLTSLLH 600
  601 EHLALTRQGN AVRRNGILEM DMSICPLIAL TIGGFGYLVF KSLNRS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle