YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19338682
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLFPENLVQA CFQQIQTVTK KVLVAPPSEE ANTTKAVISL LNETMNEAPE ETKIVIKKGL  60
   61 EFKDGMNVLG LIGFFIAFGI AMGKMGEQAK LMVEFFNILN EIVMKLVIMI MWYSPLGIAC 120
  121 LICGKIIAIK DLEVVARQLG MYMITVIVGL IIHGGIFLPL IYFVVTRKNP FSFFAGIFQA 180
  181 WITALGTASS AGTLPVTFRC LEDNLGIDKR VTRFVLPVGA TINMDGTALY EAVAAIFIAQ 240
  241 MNGVILDGGQ IVTVSLTATL ASIGAASIPS AGLVTMLLIL TAVGLPTEDI SLLVAVDWLL 300
  301 DRMRTSVNVV GDSFGAGIVY HLSKSELDTI DSQHRMHEDI EMTKTQSIYD DTKNHRESNS 360
  361 NQCVNAAHNS VVIDECKVPF PFLDIETCI

Type	Start	End	Confidence
Cytoplasmic	1	64	0.99
Transmembrane Helix	65	85	0.91
Non-Cytoplasmic	86	105	0.90
Transmembrane Helix	106	129	0.88
Cytoplasmic	130	138	0.95
Transmembrane Helix	139	163	0.88
Non-Cytoplasmic	164	176	0.82
Transmembrane Helix	177	198	0.89
Cytoplasmic	199	213	0.87
Transmembrane Helix	214	239	0.73
Non-Cytoplasmic	240	257	0.67
Transmembrane Helix	258	283	0.78
Cytoplasmic	284	389	0.82