YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8778511
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGTINIKK WVVIYPVYIN SKKTVAEGRR ISVSKSCENP NCIEISDCCK HLKLPSAVEI  60
   61 DKAYPRDFMQ VGRVRVQLKR EDGTLLNPAI TSMLPKYHLM LSLSDFLLHK FFFNSLCYIL 120
  121 NFFDAFVFVF VFVYAYAFDT VDKTIFHIAG FLDVCAYFDL ISLSCPGKCN YMNILLACCF 180
  181 ACFERKESTW KHLMQKIAEL VPRHPERVKK QEAQKAKKQE PQATTSTSGT SSKSGKGGKK 240
  241 KR

Type	Start	End	Confidence
Cytoplasmic	1	115	0.89
Transmembrane Helix	116	138	0.86
Non-Cytoplasmic	139	144	0.82
Transmembrane Helix	145	165	0.58
Cytoplasmic	166	242	0.74