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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25290699, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM  60
   61 TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV DVETIRETIE DAGFEASLIE 120
  121 NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY 180
  181 DRLLEEIENA GFEAVLISTG EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG 240
  241 TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF 300
  301 LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG 360
  361 SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF KGVDFFETSA MLISFIILGK 420
  421 YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK 480
  481 VASDGYVIWG QSHVNESMIT GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ 540
  541 IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD 600
  601 SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVSLVCS 660
  661 NLVYGFVNCI VFDKTGTLTM GKPVVVKTKL LKNMVLREFY ELVAATEVNS EHPLAKAIVE 720
  721 YAKKFRDDEE NPAWPEACDF VSITGKGVKA TVKGREIMVG NKNLMNDHKV IIPDDAEELL 780
  781 ADSEDMAQTG ILVSINSELI GVLSVSDPLK PSAREAISIL KSMNIKSIMV TGDNWGTANS 840
  841 IAREVGIDSV IAEAKPEQKA EKVKELQAAG HVVAMVGDGI NDSPALVAAD VGMAIGAGTD 900
  901 IAIEAADIVL MKSNLEDVIT AIDLSRKTFS RIRLNYVWAL GYNLMGIPIA AGVLFPGTRF 960
  961 RLPPWIAGAA MAASSVSVVC CSLLLKNYKR PKKLDHLEIR EIQQKDKDRE GVSSKSSNVG1020
 1021 DKKRLPVKSV AKFLVVSKLL ATIIRSRYFI RSFPFRSSLQ PHILFAFKYL DNQNGRQICN1080
 1081 FFTYSSTSTK NLPYYLSLSA TCSIPSPYCR RINNVPYYVN GLISLGCGRE QFICNPSTSK1140
 1141 YIPLPKVKSR KKIIQNFFGS WRMIECNNNL LHRPKTNGEC INGTMLLQGE K

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle