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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47716903
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLMKLILLP LFYACFSAHC AGTTNARKSA CMIKNAKADC SHMNLDAIPT DLPTNITTLD  60
   61 VSHNRLKTLS SLHMYTNLVN IDASYNSLAG IEKDLCLSLP HLQFLNAQHN QVYLISEKDL 120
  121 KNCFHLTQLD LSDNKLKLQG EPFSLLKNLT WLDVSRNKLT SAKLGTEPQL PNLVTLVLSG 180
  181 NNINILQKND FSFLSNSSSF RVLILSSLIL KKVENGCFKA IDTLYDLVLD SSKLTSQFTT 240
  241 SLFEELADTA LRNLSLKSTE QVTLSNTTFQ GLEKTKITVL DLSENRISKI VDGAFQWLPQ 300
  301 LEFLSLEHNT IRHLTNDSFS GLGNLRQLNL RKALIKSHAS LPVIDDFSFQ HLVQLEYLCM 360
  361 ANTAFRELTE QIFSGLRNLK TLDLSWSITG IKTVTNKTFA GLKESPLLQT LNLTGMGINK 420
  421 LEPGAFSSFG NLSNLLMSRN FINQQLQGNE FKGLSNIKEI DMSINQQSIS LTNASFVHVS 480
  481 TLRILKLGRA LKGTLDMEPS PFRPLVNLTI LDLSNNNIAN INGDLLEGLY NLKVVKMQHN 540
  541 NLARLWKMAN PGGPVLFLKD ATNLSYLNLD YNGIDEIPPN AFRGFSELHE LSLRGNLLDQ 600
  601 LHASVFDDLN SLKYLHLQKN LITSVQRATF GVPLSKLKEL YMDHNPFDCT CESILWFSEW 660
  661 LNSTNTSVPG FPQSYICNTP NAYFNHSVMN FDPLSCKDMT PFKALYILSS TAVLMLLFIS 720
  721 FLVHFQGWRI QFYWNIMANR MLGSLKDAKV TEGRFQFDAY IIHAGEDKSW VERSLLSLED 780
  781 KDLNFFYEQR DSTPGHSRLK TIVDNMVHSR KITFVITEML LKDPWCRQFK AHHALHHVME 840
  841 DNRDSLILIF LEDVTDYNLN RSLHLRRGML KPKCVLYWPL HKERIPAFHQ KLRSALASTN 900
  901 KVN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle