YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAT2_BRAOL
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAAAAVIV PLGILFFISG LVVNLLQAVC YVLIRPLSKN TYRKINRVVA ETLWLELVWI  60
   61 VDWWAGVKIQ VFADDETFNR MGKEHALVVC NHRSDIDWLV GWILAQRSGC LGSALAVMKK 120
  121 SSKFLPVIGW SMWFSEYLFL ERNWAKDEST LKSGLQRLND FPRPFWLALF VEGTRFTEAK 180
  181 LKAAQEYAAT SQLPVPRNVL IPRTKGFVSA VSNMRSFVPA IYDMTVAIPK TSPPPTMLRL 240
  241 FKGQPSVVHV HIKCHSMKDL PESEDEIAQW CRDQFVAKDA LLDKHIAADT FPGQKEQNID 300
  301 RPIKSLAVVV SWACLLTLGA MKFLHWSNLF SSLKGIALSA LGLGIITLCM QILIRSSQSE 360
  361 RSTPAKVAPA KPKDKHQSGS SSQTEVEEKQ K

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.73
Transmembrane Helix	8	34	0.74
Cytoplasmic	35	304	0.75
Transmembrane Helix	305	326	0.88
Non-Cytoplasmic	327	332	0.71
Transmembrane Helix	333	354	0.92
Cytoplasmic	355	391	0.81