YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|633157, gi\|10...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRLQWLLP LLGSSVAGFL GRFLGSEGSA ILTTTCVSFF ALVGFLFVFR IYYLRLKGPL  60
   61 RGILNLFVVF FIAMVISLIR IKVIYLVSPA LPLLGPFLWY AFSGSSGEIV NHQTEASSEG 120
  121 FTYTSDMLED SASSGRSSSV NQPIQREQAG PSNAFPAPQP TGAPAAQQQN HLDQPAGERE 180
  181 ARAQEHARIS AEIERIMAAC ENEEAAMIRK AHSLLHQLGI TLEDAEDVKR ALQLALHDDW 240
  241 EHDIDDRKRH FTVLSAKLRN SSL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	25	0.91
Non-Cytoplasmic	26	30	0.81
Transmembrane Helix	31	53	0.93
Cytoplasmic	54	61	0.85
Transmembrane Helix	62	84	0.86
Non-Cytoplasmic	85	263	0.55