YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19071568
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFKDGMNVLG LIGFFIAFGI AMGKMGEQAK LMVEFFNILN EIVMKLVIMI MWYSPLGIAC  60
   61 LICGKIIAIK DLEVVARQLG MYMITVIVGL IIHGGIFLPL IYFVVTRKNP FSFFAGIFQA 120
  121 WITALGTASS AGTLPVTFRC LEDNLGIDKR VTRFVLPVGA TINMDGTALY EAVAAIFIAQ 180
  181 MNGVILDGGQ IVTVSLTATL ASIGAASIPS AGLVTMLLIL TAVGLPTEDI SLLVAVDWLL 240
  241 DRMRTSVNVV GDSFGAGIVY HLSKSELDTI DSQHRMHEDI EMTKTQSIYD DTKNHRESNS 300
  301 NQCVYAAHNS VVIDECKVTL AANGKSADCS VEEEPWKREK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	45	0.85
Transmembrane Helix	46	69	0.88
Cytoplasmic	70	78	0.90
Transmembrane Helix	79	103	0.88
Non-Cytoplasmic	104	116	0.78
Transmembrane Helix	117	138	0.88
Cytoplasmic	139	153	0.83
Transmembrane Helix	154	179	0.71
Non-Cytoplasmic	180	197	0.64
Transmembrane Helix	198	223	0.78
Cytoplasmic	224	340	0.79