YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16223976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNYIKAENL KFKRTFSRRM IIFVPLLNIV FSFLMNIQFF VSGTFNWWSI IFMPVMISLF  60
   61 CSLSHQKEKR ASNYNGTYSL PVDLEKLWYA KIIIIMIYSL ISQIVFLIFM FLMGFVIADL 120
  121 SNVSLSIIAA SILLWITSLW QIPLCLYVAR KWGFTIAVMF NLIGALVLGI MPASRAFWWF 180
  181 IPWSWPIRMM CPAIGIHPNG LLLEKNDPLL SWAVVPSAVF ISIVLLLILA FLTSRSFAPA 240
  241 KDYRTNKQEA M

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	46	0.72
Transmembrane Helix	47	65	0.93
Cytoplasmic	66	93	0.88
Transmembrane Helix	94	117	0.86
Non-Cytoplasmic	118	124	0.69
Transmembrane Helix	125	144	0.90
Cytoplasmic	145	153	0.72
Transmembrane Helix	154	177	0.87
Non-Cytoplasmic	178	209	0.84
Transmembrane Helix	210	233	0.88
Cytoplasmic	234	251	0.82