YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15163430
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPSPETGRL IRAAHLHISG CEFIVSDILR QASQGQVQTM NFTIPAPFTA IHTIFDLAFT  60
   61 TSLDTMLGTI QEAVSAPLVA CVTLWIIVQG ILVMRGEIDT RGGITRVITV TVVVALVVGQ 120
  121 ANYHDYVVSV FEETIPNFIQ QFSGSGLPLQ TIPAQLDTMF ALTQAAFQRI ASEIGPMNDQ 180
  181 DILAFQGAQW VFYGTLWSAF GIYDAVGILT KVLLAIGPLI LTGYIFDRTR DIAAKWIGQL 240
  241 ITYGLLLLLL NLVATIVILT EATALTLMLG VITLAGTTAA KIIGLYELDM FFLTGDALIV 300
  301 ALPAIAGNIG GSYWSGATQS ANSLYRRFAQ VDRR

Type	Start	End	Confidence
Cytoplasmic	1	38	0.82
Transmembrane Helix	39	59	0.74
Non-Cytoplasmic	60	72	0.76
Transmembrane Helix	73	93	0.92
Cytoplasmic	94	101	0.91
Transmembrane Helix	102	123	0.88
Non-Cytoplasmic	124	199	0.83
Transmembrane Helix	200	226	0.80
Cytoplasmic	227	235	0.86
Transmembrane Helix	236	258	0.87
Non-Cytoplasmic	259	263	0.63
Transmembrane Helix	264	285	0.78
Cytoplasmic	286	291	0.66
Transmembrane Helix	292	314	0.84
Non-Cytoplasmic	315	334	0.69