YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37403, gi\|224906
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGITTIEAV KRKIQVLQQQ ADDAEERAER LQREVEGERR AREQAEAEVA SLNRRIQLVE  60
   61 EELDRAQERL ATALQKLEEA EKAADESERG MKVIENRALK DEEKMELQEI QLEEAKHIAE 120
  121 EADRKYEEVA RKLVIIEGDL ERTEERAELA ESRCREMDEQ IRLMDQNLKC LSAAEEKYSQ 180
  181 KEDKYEEEIK ILTDKLKEAE TRAEFAERSV AKLEKTIDDL EDTNSTSGDP VEKKDETPFG 240
  241 VSVAVGLAVF ACLFLSTLLL VLNKCGRRNK FGINRPAVLA PEDGLAMSLH FMTLGGSSLS 300
  301 PTEGKGSGLQ GHIIENPQYF SDACVHHIKR RDIVLKWELG EGAFGKVFLA ECHNLLPEQD 360
  361 KMLVAVKALK EASESARQDF QREAELLTML QHQHIVRFFG VCTEGRPLLM VFEYMRHGDL 420
  421 NRFLRSHGPD AKLLAGGEDV APGPLGLGQL LAVASQVAAG MVYLAGLHFV HRDLATRNCL 480
  481 VGQGLVVKIG DFGMSRDIYS TDYYRVGGRT MLPIRWMPPE SILYRKFTTE SDVWSFGVVL 540
  541 WEIFTYGKQP WYQLSNTEAI DCITQGRELE RPRACPPEVY AIMRGCWQRE PSNATASRMC 600
  601 TPGCKPWPRH LLSTWMSWAR GPAQGLGVVS RNTGACPQHP P

Type	Start	End	Confidence
Non-Cytoplasmic	1	239	0.86
Transmembrane Helix	240	262	0.81
Cytoplasmic	263	278	0.64
Transmembrane Helix	279	293	0.27
Non-Cytoplasmic	294	641	0.58