YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.66
Transmembrane Helix	18	40	0.91
Cytoplasmic	41	48	0.60
Transmembrane Helix	49	67	0.94
Non-Cytoplasmic	68	75	0.53
Transmembrane Helix	76	96	0.77
Cytoplasmic	97	106	0.66
Transmembrane Helix	107	129	0.92
Non-Cytoplasmic	130	145	0.68
Transmembrane Helix	146	165	0.69
Cytoplasmic	166	172	0.56
Transmembrane Helix	173	195	0.53
Non-Cytoplasmic	196	214	0.76
Transmembrane Helix	215	237	0.92
Cytoplasmic	238	250	0.71
Transmembrane Helix	251	265	0.58
Non-Cytoplasmic	266	266	0.31
Transmembrane Helix	267	289	0.78
Cytoplasmic	290	300	0.42
Transmembrane Helix	301	320	0.88
Non-Cytoplasmic	321	336	0.49
Transmembrane Helix	337	362	0.81
Cytoplasmic	363	380	0.45
Transmembrane Helix	381	399	0.91
Non-Cytoplasmic	400	413	0.46
Transmembrane Helix	414	435	0.91
Cytoplasmic	436	538	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDSLVSKLP SLSTSDHASV VALNLFVALL CACIVLGHLL EENRWMNESI TALLIGLGTG  60
   61 VTILLISKGK SSHLLVFSED LFFIYLLPPI IFNAGFQVKK KQFFRNFVTI MLFGAVGTII 120
  121 SCTIISLGVT QFFKKLDIGT FDLGDYLAIG AIFAATDSVC TLQVLNQDET PLLYSLVFGE 180
  181 GVVNDATSVV VFNAIQSFDL THLNHEAAFH LLGNFLYLFL LSTLLGAATG LISAYVIKKL 240
  241 YFGRHSTDRE VALMMLMAYL SYMLAELFDL SGILTVFFCG IVMSHYTWHN VTESSRITTK 300
  301 HTFATLSFLA ETFIFLYVGM DALDIDKWRS VSDTPGTSIA VSSILMGLVM VGRAAFVFPL 360
  361 SFLSNLAKKN QSEKINFNMQ VVIWWSGLMR GAVSMALAYN KFTRAGHTDV RGNAIMITST 420
  421 ITVCLFSTVV FGMLTKPLIS YLLPHQNATT SMLSDDNTPK SIHIPLLDQD SFIEPSGNHN 480
  481 VPRPDSIRGF LTRPTRTVHY YWRQFDDSFM RPVFGGRGFV PFVPGSPTER NPPDLSKA