YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8248034
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.93
Transmembrane Helix	19	39	0.85
Non-Cytoplasmic	40	69	0.88
Transmembrane Helix	70	91	0.92
Cytoplasmic	92	99	0.92
Transmembrane Helix	100	121	0.92
Non-Cytoplasmic	122	129	0.79
Transmembrane Helix	130	152	0.84
Cytoplasmic	153	163	0.87
Transmembrane Helix	164	189	0.87
Non-Cytoplasmic	190	212	0.92
Transmembrane Helix	213	232	0.97
Cytoplasmic	233	294	0.97
Transmembrane Helix	295	313	0.88
Non-Cytoplasmic	314	343	0.85
Transmembrane Helix	344	365	0.86
Cytoplasmic	366	372	0.74
Transmembrane Helix	373	397	0.85
Non-Cytoplasmic	398	405	0.76
Transmembrane Helix	406	428	0.87
Cytoplasmic	429	440	0.72
Transmembrane Helix	441	464	0.84
Non-Cytoplasmic	465	481	0.79
Transmembrane Helix	482	503	0.89
Cytoplasmic	504	537	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDQLQVLN ALDVAKTQLY HFTAIVIAGM GFFTDAYDLF CISLVTKLLG RIYYHHDGAP  60
   61 KPGTLPPNVS AAVNGVAFCG TLAGQLFFGW LGDKMGRKRV YGMTLMMMVI CSIASGLSFG 120
  121 HTPKSVMTTL CFFRFWLGFG IGGDYPLSAT IMSEYANKKT RGAFIAAVFA MQGFGILAGG 180
  181 MVAIIVSAAF KGAFPAQTYQ TDPLGSTVSQ ADFVWRIILM FGAIPAAMTY YWRMKMPETA 240
  241 RYTALVAKNL KQAANDMSKV LQVDIEEEQE KVENVSQNTR NEFGLFSKEF LRRHGLHLLG 300
  301 TASTWFLLDI AFYSQNLFQK DIFSAIGWIP PAQTMNALEE VYKIARAQTL IALCSTVPGY 360
  361 WFTVFFIDKI GRFAIQLMGF FFMTVFMFAL AIPYHHWTLK DNRIGFVIMY SLTFFFANFG 420
  421 PNATTFVVPA EIFPARLRST CHGISAAAGK AGAMIGAFGF LYAAQPTDRK KADAGYPAGI 480
  481 GVRNSLIVLG CVNFLGMVFT FLVPESKGKS LEEMSRENEG EEESGTEMKN SGRTVPV