YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAT1_BRANA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVASARGVS SHPPYYSKPI CSSQSSLIRI PISKGCCFAR SSNLITSLHA ASRGVTRRTS  60
   61 GVQWCYRSIR FDPFKVNDKN SRTVTVRSDL SGAATPESTY PEPEIKLSSR LRGICFCLVA 120
  121 GISAIVLIVL MIIGHPFVLL FDRYRRKFHH FIAKLWASIS IYPFYKTDIQ GLENLPSSDT 180
  181 PCVYVSNHQS FLDIYTLLSL GQSYKFISKT GIFVIPVIGW AMSMMGVVPL KRMDPRSQVD 240
  241 CLKRCMELVK KGASVFFFPE GTRSKDGRLG PFKKGAFTIA AKTGVPVVPI TLMGTGKIMP 300
  301 TGSEGILNHG DVRVIIHKPI YGSKADVLCE EARNKIAESM NLLS

Type	Start	End	Confidence
Cytoplasmic	1	113	0.92
Transmembrane Helix	114	135	0.94
Non-Cytoplasmic	136	205	0.90
Transmembrane Helix	206	228	0.84
Cytoplasmic	229	344	0.81