YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8132324
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.67
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.67
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	55	0.78
Transmembrane Helix	56	76	0.82
Cytoplasmic	77	84	0.76
Transmembrane Helix	85	103	0.74
Non-Cytoplasmic	104	124	0.57
Transmembrane Helix	125	159	0.64
Cytoplasmic	160	233	0.96
Transmembrane Helix	234	254	0.88
Non-Cytoplasmic	255	279	0.84
Transmembrane Helix	280	303	0.89
Cytoplasmic	304	337	0.94
Transmembrane Helix	338	358	0.88
Non-Cytoplasmic	359	373	0.81
Transmembrane Helix	374	393	0.94
Cytoplasmic	394	423	0.97
Transmembrane Helix	424	443	0.84
Non-Cytoplasmic	444	464	0.79
Transmembrane Helix	465	495	0.79
Cytoplasmic	496	503	0.77
Transmembrane Helix	504	526	0.85
Non-Cytoplasmic	527	546	0.72
Transmembrane Helix	547	567	0.88
Cytoplasmic	568	602	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALAAAAKK VWSARRLLVL LFTPLALLPV VFALPPKEGR CLFVILLMAV YWCTEALPLS  60
   61 VTALLPIVLF PFMGILPSNK VCPQYFLDTN FLFLSGLIMA SAIEEWNLHR RIALKILMLV 120
  121 GVQPARLILG MMVTTSFLSM WLSNTASTAM MLPIANAILK SLFGQKEVRK DPSQESEENT 180
  181 AAVRRNGYTL CPRRCSFSPS TEAKDHPGET EVPLDLPADS RKEDEYRRNI WKGFLISIPY 240
  241 SASIGGTATL TGTAPNLILL GQLKSFFPQC DVVNFGSWFI FAFPLMLLFL LAGWLWISFL 300
  301 YGGLSFRGWR KNKSEIRTNA EDRARAVIRE EYQNLGPIKF AEQAVFILFC MFAILLFTRD 360
  361 PKFIPGWASL FNPGFLSDAV TGVAIVTILF FFPSQRPSLK WWFDFKAPNT ETEPLLTWKK 420
  421 AQETVPWNII LLLGGGFAMA KGCEESGLSV WIGGQLHPLE NVPPALAVLL ITVVIAFFTE 480
  481 FASNTATIII FLPVLAELAI RLRVHPLYLM IPGTVGCSFA FMLPVSTPPN SIAFASGHLL 540
  541 VKDMVRTGLL MNLMGVLLLS LAMNTWAQTI FQLGTFPDWA DMYSVNVTAL PPTLANDTFR 600
  601 TL