YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8132774
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.97
Transmembrane Helix	63	84	0.88
Non-Cytoplasmic	85	118	0.95
Transmembrane Helix	119	138	0.94
Cytoplasmic	139	147	0.80
Transmembrane Helix	148	167	0.94
Non-Cytoplasmic	168	176	0.83
Transmembrane Helix	177	201	0.91
Cytoplasmic	202	209	0.84
Transmembrane Helix	210	234	0.89
Non-Cytoplasmic	235	241	0.87
Transmembrane Helix	242	263	0.97
Cytoplasmic	264	309	0.98
Transmembrane Helix	310	332	0.89
Non-Cytoplasmic	333	346	0.83
Transmembrane Helix	347	367	0.86
Cytoplasmic	368	379	0.78
Transmembrane Helix	380	398	0.89
Non-Cytoplasmic	399	414	0.81
Transmembrane Helix	415	436	0.93
Cytoplasmic	437	449	0.90
Transmembrane Helix	450	473	0.90
Non-Cytoplasmic	474	476	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGTSDTRRL VDALDEDDEI LGTEGSFVPA FRPQDHHADE QCLMERQQDE VVLVSNEPES  60
   61 GRLFTYLVFY LLGIGTMTPW NFFVTAEDYW KYKFRNASIN NTDLEEELTP LQKSFTCDLA 120
  121 LTATISGTTF LLLNAIFGHH VSLRTKMLGT LWMILILFGV TTGFVEINTD TWQEQFFLIT 180
  181 LIIVVLLNIS AATMSGALYG VAGLFPSEFI TAVVSGQALG GILTALAFIL VLAFDTGPNT 240
  241 TAFIFFIVGG VLILLCIVCY VILARKPFFR YYLEGGDKYK VIRAVPSHNR NGSAEGLPLE 300
  301 PILRQVMSKI YLHAISLALL YTTTLSVYPA VTVLMQSEYG HSVWTDVYFL PVVNYLIFNC 360
  361 GDYFGRLFAG WMERPLNQNT SLLFIVVRMA FVPLFLCSNS SEHSFLPVLV KHDYTFIAMM 420
  421 VMFALSNGYF TNILLIMAPK RVKQHEKELA SSIMAAALSC GMAVGSLLTL VFVQML