YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18913078
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.59
Transmembrane Helix	87	104	0.62
Non-Cytoplasmic	105	119	0.66
Transmembrane Helix	120	139	0.94
Cytoplasmic	140	155	0.89
Transmembrane Helix	156	176	0.90
Non-Cytoplasmic	177	180	0.80
Transmembrane Helix	181	200	0.92
Cytoplasmic	201	357	0.99
Transmembrane Helix	358	378	0.85
Non-Cytoplasmic	379	390	0.84
Transmembrane Helix	391	411	0.96
Cytoplasmic	412	419	0.90
Transmembrane Helix	420	442	0.91
Non-Cytoplasmic	443	458	0.80
Transmembrane Helix	459	478	0.70
Cytoplasmic	479	483	0.45
Transmembrane Helix	484	513	0.74
Non-Cytoplasmic	514	535	0.83
Transmembrane Helix	536	557	0.93
Cytoplasmic	558	570	0.87
Transmembrane Helix	571	592	0.88
Non-Cytoplasmic	593	594	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDTQCTFR NIQELPQDQV CDFVDQNCNV EQLVKFSYFY FCQVKQSIIV LDLLTILIPL  60
   61 YAFRMLSQIS EYYLSPALAK VSKCFKLSQS VAGVTLLALG NGGPDVATAI VAGSSGGDSI 120
  121 TIAVGSIFGA GLFVTTYTLQ NVIQNAGSIH IKSKTFVRDM VFYLIGCCVV FIYTIVGSIN 180
  181 LGMAIGFMSI YGLFLFTVIY QDRQRAKQEI AQSKIRKMDT IQTQRVEEAL PEIPLEQKQE 240
  241 VQINCIQANQ MPAVLNTLHD QNEERDIEGK SFVQDEQNNQ NKEGYDSIKR QESAPYNKNQ 300
  301 TEEENSEEKV KDIMTEKYEN FWDKFKEMGI LERLLILTEI PIDVARYLII PPAEENQWNK 360
  361 WRAMITTITG PLAFMWGSQQ NLNATINDEG FLVIYIVLII SFIASILIFF STKNNQPPQI 420
  421 MWLFSIFSFV VAVVLLGQAA QVMIDFINFF QIVTNMNKTF LGMTVLAWGN SATDFFLNSS 480
  481 LASIGYGVMA ATGCFAGQAF DLYLGFGIAL IFYSNQSNSS LSIFTGSSTL DWINNSIAIS 540
  541 VILFVIISSA ISIIVGLKLK FSYDQGKYTT FLKYYYLCAL TFCIILCAAD QFYE