YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54656608
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEENEKKTF VNNLLIQINI KAWFFWIVYS FLVFIIYFSA DYLYIFKNSI LGIVEINYLF  60
   61 YSFKSNFLKL KKENHINNVL INIKGLNEYD LEILKGRIFS KSDEYSREIV YNHRKPKFDN 120
  121 ENNRILLKAT LNGKYLNSDL NEIQNPIESN FESYLESQNI KEEQNTQYLY SIFVSFKNCG 180
  181 KNSSENTINL YNSKVSLFCL NNEITKSDFF IILNDLYDIW FLKFTENEPE MTKYTSLQIY 240
  241 MYNLFDLEIN YENLPDFNKS RSFLIFDNFL SQINQLLYID IKNQKKYITK DSIDFQDNQK 300
  301 TYNRLIQNLN ENNYYHFDQN TFKLSIFNHF SKFNDTDHYS FTSKNSDFLF THSIITNDTN 360
  361 TLLFPTIIWI NVIRSFILPK DYKLNFKSRI NNVTFKNHIR EENQNLFLSD WQISAIQLIH 420
  421 SNYLINHIIF NIDRFFLTLN LYNKFKLPNH ILYAIKYMNK IIXNIHTISH NYLPTILQNS 480
  481 NNLLFNPEFH NKKTFNTDLV MAVYSPIAIP IMFLIIISMF RMIRHSSMKF E

Type	Start	End	Confidence
Cytoplasmic	1	21	0.91
Transmembrane Helix	22	45	0.85
Non-Cytoplasmic	46	499	0.90
Transmembrane Helix	500	520	0.93
Cytoplasmic	521	531	0.80