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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125987481, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLTEQDYD SATPALQQQM NLARRACWSS RREGPLNGAI EIRNETTARH RHRIELADPT  60
   61 NNEQPPMTTT CSTLNQRRRR MPHCRGGGGG LLDRRMLFLC AIFCLLAGTA LARPNTSASV 120
  121 GVASVGDGDA VTQVNVRGED ATAPPVKAPR AESLEEPTVL EMKADEEDGG GGEHQKIERY 180
  181 PLSQVDFGHV KTPFIIGVWI LSASIAKIGF HMTPKLHLIF PESCLLIVVG VVIGVVLYFC 240
  241 TDVAVSPLTP NTFFFYMLPP IILDAGYFMP NRLFFDNLGT ILLMAVVGTI FNIATIGGAL 300
  301 YACGLTGIYG ESQTPGLMDI FLFTSLISAV DPVAVLAVFE EIHVNEILYI VVFGESLLND 360
  361 AVTVVMYHMM EGYTTIGLDN VIPQDIFSGC GSFFIVALGG TAIGVIWGFL TGLVTRFTDH 420
  421 VRVIEPIFIF VMAYLAYLNA EIFHMSGILA ITFCGITMKN YVESNISQKS HTTVKYALKM 480
  481 LSSSAETIIF MFLGVATVNN MHVWNTWFVV LTIAFCSVFR VLGVILLTAI ANRFRLHKLS 540
  541 RVDQFVMSYG GLRGAVAFAL VLLVDENVVK QKNMFVTTTI AVIYFTVFLQ GITIKPLVSI 600
  601 LNVKRANKRK PTMNERIHER FMDHLMAGIE DIVGKTGNYN VRDKFKRFDN RFIRPLIIRD 660
  661 LKGAEPKIIE TYSKLTMRDA MEVMRRNPST IGQMTGTESM SALFRNYTNN YIGVSPSLTN 720
  721 LDNTCRNLDM AELDYNPSKK DLTDARIHHL LAEELKPYRR HRRLSYSRHA VDDRDLSTQV 780
  781 NYKMQMNFRR MFNDRKHHKR SKRGANNKEP KENVKQNHVS FHDFQQNGTT KQLSNAEESQ 840
  841 QNPNEINVVG ASDDWDDGLT FTAKSSPDSD RANNNSLIAH IQNLPGFDAS KARIVVQHYA 900
  901 PKADDPDSEL DSPDPVGPTA AELILPWRRD RSYQSIVAEH PIPEEDRNLS RESDGERRVA 960
  961 TPTATESQLP WKRGGEECTD AVQQNEFPAW ASNKEYLAYN SPSATFLGGI NKPKQPKSVI1020
 1021 GLFRRESSSS KGGSIGIGST GAVDATASGD PMVVPSSTMM CPPGAALSTA PSTSMHNPRL1080
 1081 DKRSQSISSG SLGGGASGGM VPHHQLGPDG HSGPFPVTAS HRRNVRRGSM LELTGDTIPE1140
 1141 ESTYQHGHSK SLCEPADTDD WEGAPLTAAN GANSERLMHS GREPLLPRLG ATPRTQIRRM1200
 1201 NAGAVGGSAV GVPGRKNQVT TALLDYEDTD SDSDEEEEDD DEDEDFDLYD DENIVVTTFT1260
 1261 TPATPRHHDV GRRLGSSPDS GSEPTTKTTT TSIRLTRNND ESII

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle