YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125987045, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPLARNWP YIWQQLNALL HNTSPVITLI CVVTTFGYLL SFSDQAILLL SVTPGYILPN  60
   61 GKFWIWTAFT FCFIELHWWE VAVDVVTVGL CGKMLEPLWG QLEMFKFFAL SNFGVSLLTT 120
  121 IYYLFYYMVT KNPTILFDVH IHGLAGYVAG ICVAVRQIMP DHLIFKTRYG RLTNRNVPLT 180
  181 VLIMAIISWA IGLLDGTYPA MFASGSLVSW IYLRFYQHHP NGRGDSSESF TFVSFFPNVS 240
  241 QPFISVLVNP IYNCCLRAGV VKTPTPLRTI STASLTSISV QMPGADPHDI ERRRQIALKA 300
  301 LSERLKATDS TRHSQLPNHT HGAGHSHSHG AGHSHSHSGG GHSHGPGPAQ TPQPDFLKPA 360
  361 SNSAQMPITT SRAEPRMIST MSTIAIPMPA PPLKDGTGAA ALTDPQDGGA TLINLDDVPT 420
  421 TSSSA

Type	Start	End	Confidence
Cytoplasmic	1	18	0.81
Transmembrane Helix	19	42	0.89
Non-Cytoplasmic	43	62	0.72
Transmembrane Helix	63	88	0.67
Cytoplasmic	89	103	0.80
Transmembrane Helix	104	126	0.89
Non-Cytoplasmic	127	138	0.80
Transmembrane Helix	139	159	0.90
Cytoplasmic	160	175	0.85
Transmembrane Helix	176	193	0.90
Non-Cytoplasmic	194	197	0.52
Transmembrane Helix	198	216	0.57
Cytoplasmic	217	425	0.66