YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125987007, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACTCEIIGL ACVVALILSV SAKAPYQMRM FFIFFGAGAI VMLCVPFMML RPRDYRNALV  60
   61 PSWCFRQLCR LMGITMEVRG LENVRAGHGS VVIMNHQSAL DLCVLSYLWP VIGRGTVVAK 120
  121 KEILYLPFFG FGAWLWGTLY INRSRKTDSI NSLQKEAKAI QERNCKLLLF PEGTRNSKDT 180
  181 LLPFKKGSFH IALQSKCPIQ PVVISKYAFM DDEKKTFRPG HALIQILPEV STEKYEKDEM 240
  241 QQLIDDCRSI MQTEYTKLSK EGLALSSKKQ S

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	24	0.75
Non-Cytoplasmic	25	30	0.58
Transmembrane Helix	31	50	0.95
Cytoplasmic	51	122	0.64
Transmembrane Helix	123	141	0.85
Non-Cytoplasmic	142	271	0.65