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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54645354, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPGENPRIIE HPMDTTVPKN DPFTFNCKAE GNPTPTIQWY KDGRELKTDA GSHRMMLPAG  60
   61 GLFFLKVIHS RRESDAGTYW CQAKNEFGVA RSRNATLQVA FLRDEFRLEP QNTRVAQGEV 120
  121 ALMECGAPRG SPEPQISWRK NGQTLNLSAG NKRIRIVDGG NLAIQDSRQS DDGRYQCVVK 180
  181 NVVGTRESAT AFLKVHVRPF LIRGPQNQTA VVGSSVVFQC RIGGDPLPDV LWRRTASGGN 240
  241 MPLRRVHVLE DRSLKLDDVT LEDMGEYSCE ADNAVGSITA TGILTVHAPP KFVIRPKNQL 300
  301 VEIGDEVLFE CQATGHPRPT LYWSVEGNSS LLLPGYKDGR LEVTLTPEGR SVLAITRFAR 360
  361 EDSGKVVVCN ALNAVGSVSS RTVVSVDTQF ELPPPIIEQG PVNQTLPVKS IVVLPCRTLG 420
  421 TPVPQISWYL DGIPIDVQEH ERRNLTEAGA LTISDLQRHE DEGLYTCVAS NRNGKSSWSG 480
  481 YLRLDTPTNP NIKFYRAPEL STYPGPPGKP QLVEKGEDSV TLSWTRSNKV GGSSLVGYVI 540
  541 EMFGKNETDG WVAVATRVQN TTYTQSGLVP GVNYFFLIRT ENSHGLSLPS PMSEPIAVGT 600
  601 RYFNSGLDLS EARASLLSGD VVELSNASVV DSTSMKLTWH IINGKYVEGF YVYARQLPNP 660
  661 IVNNPAPVST NSNPLLGPTS ASATASASAS ALISTKPNIA AAGKRDGETH NPQQQQQQPS 720
  721 SAALSTKYRM LTILNGGGAS SCTLTGLVQY TLYEFFIVPF YKSVEGKPSN SRIARTLEDV 780
  781 PNEAPFGMEA LLLNASAVFL KWKAPELKAQ HGILLNYHVV VRGIDTAHNF SRILTNVTID 840
  841 AASPTLVLAN LTEGVMYTVG VAAGNNAGVG PYCVPATLRL DPITKRLDPF INQRYPINQD 900
  901 HVNDVLTQPW FIILLGAILA ILMLSFGAMV FVKRKHMMMK QSALNTMRGN HTNDVLKMPS 960
  961 LSTRNGNGYW LDASTGGMVW RPSPSGDSLE MHKDHIADYA PVCGAVSRGN FPGCGWGVGG1020
 1021 CGENVVLAIN KPSNNWVLFF ICFYLFICRY VGEYSNIPTD YAEVSSFGKA PSEYGRHGNA1080
 1081 SPAPYATSSI LNPNQQQQQH HQQQARYQQR PVGPGYGLQR PMHPHYLPLP SGNHYQQMST1140
 1141 TSEIYPSNTG PARSVYSEQF YYPKDKHMHM HITENKLSNC HTYEAAPGPK QPSAPAGNGN1200
 1201 SSQFASVRRQ QLPPGCSIGR DSARFKVINT STGQGGPPMD QGKTQQQQNL LDLDGSSFCY1260
 1261 NGLADSGCGG SPSPMAMLMS HEDEQALYHT ADGDLDDMER LYVKVDEQQP PLQQQQLLPL1320
 1321 VPQHPSELLQ PSPHHHQSWR GQSTRGSRKV PQEAINVKEA TELIYAPGSV ASERSLLSNT1380
 1381 GSGSSGQPPC HNV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle