YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125986337, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPHRGYRQRV AHFTLKSTLY ASWALGLFPF TYDSRTRQLT RSRWLLSYGL VLNLGLIGVV  60
   61 LLPGTEDHRD VRIDMFERNP IIQQVENMVE IISFLTAVAM HLGIFWKSRE MVTILNELFF 120
  121 LEKRHFSNLI LAHCHQFDKY VIQKCILVVL EVGSSLLIYF GVPDSNLVVT RAFCIYLVQV 180
  181 GVLLGVTHFH LAVIYIYRFV WTINGQLLEL ANQQRRGQKV DPARIKRLFW LYSRLLEVNS 240
  241 RLAAIYDIPV TLFMVTLMSA NIMIAHVLII IWINQFSLLD ILLLFPQALL INFYDLWLSI 300
  301 AFCELVERTG RQTSDILKLY NDGEDMDEEL QRSLSDFALF CSHRRLRFRH CGLFYVNYEM 360
  361 GFRMIITNIL YLVFLVQFDY MNLKYK

Type	Start	End	Confidence
Cytoplasmic	1	43	0.63
Transmembrane Helix	44	65	0.92
Non-Cytoplasmic	66	86	0.70
Transmembrane Helix	87	105	0.84
Cytoplasmic	106	139	0.80
Transmembrane Helix	140	162	0.75
Non-Cytoplasmic	163	171	0.66
Transmembrane Helix	172	197	0.79
Cytoplasmic	198	249	0.76
Transmembrane Helix	250	273	0.85
Non-Cytoplasmic	274	280	0.58
Transmembrane Helix	281	301	0.72
Cytoplasmic	302	353	0.77
Transmembrane Helix	354	375	0.77
Non-Cytoplasmic	376	386	0.68