YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125985319, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CAGKILRIAG AVILPNLGGI VNGQLTRKNL TNWYANLKFP SFKPPNWVFA PMWTSLYAGM  60
   61 GYGSYLVWRD GGGFGGEEAR LPLIAYGTQL ALNWAWTPIF FGQHNIKGGL IDIIALTTTA 120
  121 SACGVLFYRV NKVAGLLFVP YVAWLGFATA LNYAMWKLNP QKQAAEEEKP STSHAK

Type	Start	End	Confidence
Cytoplasmic	1	46	0.57
Transmembrane Helix	47	68	0.88
Non-Cytoplasmic	69	80	0.56
Transmembrane Helix	81	101	0.71
Cytoplasmic	102	107	0.43
Transmembrane Helix	108	128	0.89
Non-Cytoplasmic	129	135	0.40
Transmembrane Helix	136	156	0.90
Cytoplasmic	157	176	0.53