YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125985147\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGKQQKVQ SSGFTKEEEL LLQDFSRNVS TKSSALFYGN AFIVSAVPIW LFWRIHNMDL  60
   61 WPSSILFVLV TAASTYLMAT AYKNIKFQLK HKIAGRREDA VTREVNRQLG DDKKVTRKEK 120
  121 DERILWKKNE VADYEATTFS IFYNNSIYLA VIIFISFFLL KNSTPFVNYI FSVGLASGAL 180
  181 ALFSTSAQVN

Type	Start	End	Confidence
Cytoplasmic	1	34	0.95
Transmembrane Helix	35	53	0.95
Non-Cytoplasmic	54	60	0.75
Transmembrane Helix	61	82	0.88
Cytoplasmic	83	140	0.90
Transmembrane Helix	141	160	0.87
Non-Cytoplasmic	161	165	0.78
Transmembrane Helix	166	187	0.88
Cytoplasmic	188	190	0.72