YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54644307, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPKEPRTRS DYFRDQWRAW RVLGALQLNA RRYWSGAMLL NIVVALYAPA LLLSMFSFET  60
   61 PLENITNFSL SITSTATVLK FGLYVLQLGR VGDLEKVIAR LDDRVEGAEQ LRCHRLMAKK 120
  121 LRHLSNLFLY TYGFVLLNSE FSFLFRSERS LPFPSWFPFD WKTSTVNYIG ALGFQLVAIF 180
  181 GQILQNFVDD SFPPLALCLC AGHCQLLILR ISSIGHGPSE QEANEAELVE CIKDQKELYG 240
  241 LLELTRDVIS WPMLIQFFVM ALNIGATMFG LVFFADTMQD RMYFVSYLLA LVLQTYPVCY 300
  301 YGSLLEDGFG HLHYAVFGSN WVNQSRSYRA SMTILGERTK RHPRLLAGSL VPIHLSTFQG 360
  361 TCKAAYSFFT LIGNTRERAG PDPSQN

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	56	0.84
Non-Cytoplasmic	57	64	0.81
Transmembrane Helix	65	86	0.76
Cytoplasmic	87	123	0.85
Transmembrane Helix	124	145	0.85
Non-Cytoplasmic	146	164	0.80
Transmembrane Helix	165	184	0.91
Cytoplasmic	185	191	0.68
Transmembrane Helix	192	214	0.71
Non-Cytoplasmic	215	253	0.80
Transmembrane Helix	254	275	0.93
Cytoplasmic	276	282	0.77
Transmembrane Helix	283	304	0.75
Non-Cytoplasmic	305	309	0.63
Transmembrane Helix	310	324	0.31
Cytoplasmic	325	386	0.46