YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125984228\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDWAGLVLK CSYYYGHVIG LTNFEFDWRT GRVYTSQRST VYAMCMGVIY PVLLVYRWVG  60
   61 RARINLMFEK ANMLHEYVMV LVGGLRIVAG LSTLIGRWQK RRRVMGLTRS VFRLFRERPE 120
  121 VLMMCRRGIL VKVFIGVVTD SLHVLFSVDT MGSHMDTGLL IGQFLMYSLT SIVNLAVAQH 180
  181 SLTMLFLRAR YQLLNRELRQ VIDESSGLSH RPPRRGVFIC RCCCLADRLD AIASQQGKLQ 240
  241 AMVMKIGQVF AIQGLLVYSG YYLSTVAVGY LTYSIFKNGP EALGITPMGL VLIAVWCCFY 300
  301 YTDAMLNLFV MLNILEEHKA TTRLLEQRTL FAEGLDVRLE QAFESLQLQL IRNPLELNIM 360
  361 QIFPVTRGST TAMFGSVLTH CIFLIQYDME HF

Type	Start	End	Confidence
Cytoplasmic	1	38	0.94
Transmembrane Helix	39	59	0.93
Non-Cytoplasmic	60	76	0.88
Transmembrane Helix	77	96	0.95
Cytoplasmic	97	127	0.92
Transmembrane Helix	128	147	0.92
Non-Cytoplasmic	148	163	0.79
Transmembrane Helix	164	186	0.84
Cytoplasmic	187	248	0.95
Transmembrane Helix	249	271	0.82
Non-Cytoplasmic	272	282	0.79
Transmembrane Helix	283	302	0.88
Cytoplasmic	303	367	0.89
Transmembrane Helix	368	387	0.70
Non-Cytoplasmic	388	392	0.69