YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54644146, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKMSKLQVIV HPVKKEFARK SCGFDHDTPD DFVKSQWQTC TKSMIYLFYR WFMALFFLGV  60
   61 VIESMWPLAD DDTSYWLYFI YMTNWGIWMC LLTNLLGAVL VSIWHYHPEY ADKLLNVKSS 120
  121 FSYFRLYWGM HIITLVLSIV ITIIYWTILY DANESSLDAT NVLTHAFNSI CMFIDLWIVA 180
  181 HPLRLLHIFL PVLFGVIYAI FSYIYQVCGG INKKGKPYIY HVIDWTKPQS SFITVLGILI 240
  241 LSCCVYVLLF AFFKLRMFLH RRCHRANFVL PTTGNKVNGG SDDKQTGNGI QHSSSRISMV 300
  301 LGNFAGYENQ AYAPS

Type	Start	End	Confidence
Cytoplasmic	1	46	0.99
Transmembrane Helix	47	68	0.92
Non-Cytoplasmic	69	84	0.92
Transmembrane Helix	85	106	0.95
Cytoplasmic	107	126	0.93
Transmembrane Helix	127	149	0.94
Non-Cytoplasmic	150	160	0.84
Transmembrane Helix	161	179	0.93
Cytoplasmic	180	185	0.80
Transmembrane Helix	186	207	0.89
Non-Cytoplasmic	208	231	0.92
Transmembrane Helix	232	253	0.95
Cytoplasmic	254	315	0.97