YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54644141, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTANSLLGRS ILNEGRSNKR SFVSLIVGLI VGFCLAELFV YSTPERGEFM PYDGHRHGDV  60
   61 NDAHHSHDMM ELQGPEQDVG THEHAHENAT IAEKLYSEVR VLCWIMTNPT NHQKKARHVK 120
  121 RTWGKRCNKL IFMSSAKDEE LEAVALPIGE GRNNLWGKTK EAYKYIYEHH INDADWFLKA 180
  181 DDDTYTIVEN MRYMLYPYNP ETPVYFGCKF KPYVKQGYMS GGAGYVLSRE AVRRFVEKAL 240
  241 PDPKLCKQDN TGAEDVEIGK CLENVKVLAG DSRDANGRGR FFPFVPEHHL IPAHTEKKFW 300
  301 YWQYIYYKTD EAGLDCCSDN AISFHYVSPN QMYVLDYLIY HLRPYGIINA PEALPAKLGV 360
  361 GEVMPAPKEP VTETSSEKVS KRSAETETK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.73
Transmembrane Helix	21	41	0.73
Non-Cytoplasmic	42	389	0.99