YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643990, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNKLNLVL PPVNTEATVA AAQVAPTPPF KTPSGTETHS LLGKPKTSID ALTETLEGLD  60
   61 MDDTERKRIK VFLSQKEKIG ELSDEDLEKL GELGSGNGGV VMKVRHTHTN LIMARKLIHL 120
  121 EVKPAIKKQI LRELKVLHEC NFPHIVGFYG AFYSDGEISI CMEYMDGGSL DLILKRAGRI 180
  181 PESILGRITL AVLKGLSYLR DKHAIIHRDV KPSNILVNSS GEIKICDFGV SGQLIDSMAN 240
  241 SFVGTRSYMS PERLQGTHYS VQSDIWSLGL SLVEMAIGMY PIPPPNTATL ASMFADKVED 300
  301 SNQPVDEPRA MAIFELLDYI VNEPPPKLEH ETFSSEFKDF VDICLKKQPD ERADLKTLLS 360
  361 HPWIRKAEVE EVDISGWVCK TMDLPPSTPK RNTSPN

Type	Start	End	Confidence
Signal Peptide	1	21	0.60
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	396	0.99