YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125983792\|ref...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLMFLMLM VLPIVICTFS APNKFGAYAA EAVEDDLVDV DSEEGAVTGE DADADEDTDK  60
   61 ESSASPNADT YLLFTKPLYT PGQQLDLPGG KPVEFLIGFT NKGAEEFVIE TVEASFRYPM 120
  121 DFNYFIQNFS AVAYNREVKP GFESTVSYTF LPSDQFAGRP FGLNIALAYR DANGIQYNEA 180
  181 VFNETVLISE VDEGLDGETF FLYVLLAGIV VLLLVIGQQY LLGSSGKRKR AAAKKVIETG 240
  241 TANDSTIDYD WVPQETLRAL QKSPPKSKTP KTSPKPGKQT SPKAASQQSP KQRKVKRSAG 300
  301 DD

Type	Start	End	Confidence
Signal Peptide	1	29	0.86
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	199	0.99
Transmembrane Helix	200	222	0.88
Cytoplasmic	223	302	0.94