YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643922, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAVTPIGG TGTTALPAGF DPTAEAVEKT LCFRGFWAWF VLLLLIGICA LFVMWLLRKC  60
   61 IQGPAYRKAN RIDGKVVIVT GCNTGIGKET VLELARRGAK VYMACRDPGR CEAARIEIMD 120
  121 RTQNQQLFNR SLDLGSLESV RNFVARFKAE ESRLDLLINN AGIMACPRSL TADGYEQQLG 180
  181 VNHLGHFLLT NLLLDRLKQA TPSRIVVVSS AAHLFGRINR EDLMSERKYS KFFGAYSQSK 240
  241 LANILFTRKL SVLLKDTGVT VNCCHPGVVR TELNRHFAGP AWMKSALQVV SLYFFKTPRA 300
  301 GAQTTLRLAL DPSLESSTGG YYSDSMRFPL VPWARSTDTA DWLWRESEKL VGLPPIEPPP 360
  361 AQNGNGSTNG SANGNGSPGT AAAETVDTVV VNR

Type	Start	End	Confidence
Cytoplasmic	1	35	0.75
Transmembrane Helix	36	57	0.94
Non-Cytoplasmic	58	393	0.78