YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643749, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELNKQQSQ DTTDGGIEKG DYPRATNGVV FGAILTFGSS FVLMMSFCSP YWIESYEETR  60
   61 SSFKNMGLWQ YCFKDFVYPK YAFPKQFTGC HNIFSHVCFD QNRFRFRLRL ISPLSLQEYY 120
  121 VIREYLLPGW LMAVQGFVTM SFIIVFLVLT LLALTIIRLP LKPVLQYEWL LVRLSYMGTA 180
  181 ISSLFMFLAV CIFGGCAYRR DWLMYPRFNV LGWSYAMAVV TFMLLGLAAL ILHREARQAF 240
  241 EARGEQKNLV MQMEMQEPGY QPPRHHHSQS RSLQGYI

Type	Start	End	Confidence
Cytoplasmic	1	27	0.86
Transmembrane Helix	28	48	0.89
Non-Cytoplasmic	49	135	0.86
Transmembrane Helix	136	157	0.92
Cytoplasmic	158	173	0.79
Transmembrane Helix	174	197	0.88
Non-Cytoplasmic	198	210	0.86
Transmembrane Helix	211	233	0.92
Cytoplasmic	234	277	0.92