YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643607, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	29	0.87
Non-Cytoplasmic	30	40	0.79
Transmembrane Helix	41	62	0.90
Cytoplasmic	63	73	0.92
Transmembrane Helix	74	97	0.87
Non-Cytoplasmic	98	104	0.78
Transmembrane Helix	105	124	0.91
Cytoplasmic	125	130	0.85
Transmembrane Helix	131	149	0.93
Non-Cytoplasmic	150	155	0.67
Transmembrane Helix	156	175	0.81
Cytoplasmic	176	188	0.73
Transmembrane Helix	189	208	0.87
Non-Cytoplasmic	209	237	0.73
Transmembrane Helix	238	259	0.82
Cytoplasmic	260	265	0.63
Transmembrane Helix	266	297	0.69
Non-Cytoplasmic	298	375	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKRTSSRHVA VVLMMCLFWY VISSSNNVIG KMVLNEFPFP MTVTLVQLCS ITLYSGPFFN  60
   61 LWRIRKYQEI PRAYYMRLIV PLAIGKLLAS VTSHISLWKV PVSYAHTVKA TMPLFTVVLT 120
  121 RVFFNEKQPT LVYLSLLPII TGVGIATVTE ISFDMLGLVS ALISTMGFSM QNIFSKKVLK 180
  181 DTNIHHLRLL HLLGKLSLFI FLPIWLYMDS LAVFRHSAIK NMDYRVIALL FADGVLNWLQ 240
  241 NIIAFSVLSL VTPLTYAVAS ASKRIFVIAV SLVILGNPVT WVNCLGMTLA IVGVLCYNRA 300
  301 KQITRSKEPP TLPLSQSNHI KYTPLQQQTD PYYRGALNGK MSNGLHKPGS ALSGNSLLAN 360
  361 GSGMPSGTAT RLLFV