YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194108680, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTFVKSVFL ARKLCVANPA LASQVVRSMA GWNKDYKPAP FPKTEKEREA AAKKYYLLPE  60
   61 EYKPYADDGL GYGDYPKVGG GLGVENKDSY YPWDYPEHKR NLHEPISADH DLYSEDRYSQ 120
  121 AEKPRYSTSY YVLSFVGVMS GCLALYYWLE DKKMYRPVAA KQYPGDGVKH YTFEK

Type	Start	End	Confidence
Signal Peptide	1	28	0.65
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	128	0.84
Transmembrane Helix	129	149	0.79
Cytoplasmic	150	175	0.67