YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125982976, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHAHHTAPN VDHSLHHDHA GMHHDHSGMD SSISPTTTTT DSTTHDMHAV HHHSGGGGGT  60
   61 GTGMEHMMSM AFHFGYNETI LFSWWHIDTV SGLIGSMIAI FLLALLYEGL KYYREYLFWK 120
  121 TYNLLEYRPV TGPQRNPEAP RLPSAAAAAP SPVQYVGEVV HKQPPSMLSV NHLYQTLLHI 180
  181 LQVTLSFLLM LIFMTYNVWL CLMVVLGAAV GYFLFCWKKS VIVDVTEHCH

Type	Start	End	Confidence
Cytoplasmic	1	54	0.81
Transmembrane Helix	55	74	0.65
Non-Cytoplasmic	75	83	0.71
Transmembrane Helix	84	107	0.85
Cytoplasmic	108	171	0.82
Transmembrane Helix	172	193	0.71
Non-Cytoplasmic	194	197	0.51
Transmembrane Helix	198	217	0.87
Cytoplasmic	218	230	0.74