YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643543, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	49	0.89
Non-Cytoplasmic	50	67	0.90
Transmembrane Helix	68	87	0.94
Cytoplasmic	88	97	0.67
Transmembrane Helix	98	117	0.95
Non-Cytoplasmic	118	122	0.79
Transmembrane Helix	123	144	0.92
Cytoplasmic	145	155	0.79
Transmembrane Helix	156	176	0.94
Non-Cytoplasmic	177	184	0.77
Transmembrane Helix	185	206	0.91
Cytoplasmic	207	428	0.99
Transmembrane Helix	429	451	0.91
Non-Cytoplasmic	452	465	0.89
Transmembrane Helix	466	484	0.95
Cytoplasmic	485	494	0.80
Transmembrane Helix	495	514	0.95
Non-Cytoplasmic	515	520	0.85
Transmembrane Helix	521	544	0.90
Cytoplasmic	545	554	0.75
Transmembrane Helix	555	575	0.91
Non-Cytoplasmic	576	585	0.78
Transmembrane Helix	586	605	0.95
Cytoplasmic	606	631	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKEQQHHQPH QKPCEMDLER MPTPPDGGWG WVVVFASFMI HIVTDGMTYS FGIFYNEFLD  60
   61 YFKEGKGYTA WIASIMVGVT FSSGPISSSF VNRYGCRAVT IAGAILAASC IIVSMFAQNV 120
  121 LTLIITIGFG TGLGFGLIYL PAIVSVTQYF DSKRSLATGI AVCGSGFGTF VFAPLTEYLI 180
  181 GSYGWRGAML IIGGIVLNCI IFGAMFRPLE LEAPPKTPPN TPSTPKLGKK SAIIDENTTP 240
  241 AELEPLKVVP TDQYLQLPQR TDVPAGGVAT GGSTLCRSNS MGHNLKPNLN NNSNGAINGQ 300
  301 TPLAPPTHTT VVVKSTSNDD IARNCHSQLQ LTPLRDAHRE RSASGTMYRV DALYQGSLHN 360
  361 LPEYASSRND LNRSMSGSGV IKRYGSLRQS NQMDQSQESA KCCGCITCST ETRDTFSEMM 420
  421 NFSLLKDMIF VIFSVSNFCT SIGFNVPYLY IAAYSEELGI SKQNSSYLIA TIGVANTVGR 480
  481 IILGYVSDKP WVNRLLVYNV CLTACGFATA MVPLCKDFNS LAMYCVVFGF TIGAYVGLTS 540
  541 VILVDLLGLE KLTNAFGLLL LFQGIASFIG PPIGGGMYDL TNSYSPAFLM AGLMIAISGL 600
  601 VMFAIPPLQR YQADKADNAN HKNNSEHLSL S