YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643500\|gb\|E...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCSAVTLSI ATICAIIATA LLAIAFSTDN WLHYDVWRNQ IQAFASKHSD AESLLYNMNM  60
   61 KYYYYTRTRG LFRICYPKER PPASAVPTYL SPIETHCSNI DYFPQAEDEK IANEDATSRL 120
  121 HLARSCIALF IISFVTIFCA FWTGLSGCWK RSSGAITATS ILLLVTCLLA AGAMGLWHTV 180
  181 EFFEKEKVVG EDYFQQWNTV LRDNTKIAYD WSYIVAWAGI GTCLLSAILL SGAAVCLRNE 240
  241 REKEEQLNLQ YLMPVYSQKQ PPYPPYANYA QPQIYPGPYY HGSQYGPYNY

Type	Start	End	Confidence
Signal Peptide	1	25	0.55
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	125	0.96
Transmembrane Helix	126	145	0.95
Cytoplasmic	146	154	0.77
Transmembrane Helix	155	176	0.90
Non-Cytoplasmic	177	213	0.94
Transmembrane Helix	214	237	0.90
Cytoplasmic	238	290	0.98