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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54643387, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTVPSRFGL GLGLVVGTGI GIGSALHTRS TRTRIRSPRA KRRARWKPVR RQLSKQTCQA  60
   61 YGSRSAASKL INDQRHPTAN PKHTTRTTRN SGQKTPVKTA SAAVTFKNRQ QQSMFCCNTV 120
  121 LPPPPQLFRS SSSPSSLGSR REVDSFKRAM TFSYPMSPIM LLLLLLMMLC TAGNCQICGP 180
  181 PAVPLNAKVR TVAGETGISE AHYECDAGYE LFGSPSIKCD ARSGWDRDLP FCGVNVAYRK 240
  241 PVNQSSYTRS GPASYANDGK PGNKNPDGQE CSETQKEPSP WWRVDLLTPQ AVHVVRITTR 300
  301 GCCGHQPLQD LEIRVGNSSA DLQRNPLCAW YPGTLDEGVV KTFTCARPLV GQYVAIQLVG 360
  361 VEGSLSLCEV ETFTNDEFSM DRCLSPKLGV DTVVTTFSKT CYDFHITKGE SFDKAQAICQ 420
  421 QTGGDLVHDF RGATSAYILS ELERRKTELK PQLVWIGAQK EPGITSRTWK WVNGEVVLKP 480
  481 TWGKDQPNNY NGEQNCVVLD GGRNWLWNDV GCNLDYLHFI CQHTPLSCGS PDAQQNTTVM 540
  541 GKKFTLGEKI QYDCPKGHSL LGQAERDCRL DGTWSGSAPT CKYVDCGSLP ELKFGSIHLS 600
  601 EERTSFGVVA TYSCHENYTL IGNENRTCEV DGWSGKQPEC LVDWCPDPQR ITGGNVRFSD 660
  661 KRAGSTATYT CEPGYVLVGE AVSLGKRTKP DGSAFNSCNT FQIISCGLGG EWSSKTPSCR 720
  721 FVDCGAPARP DRGISILLNG TTTVDSVVKY ECDEDHWLDG PTELYCTRDG KWSGEAPVCE 780
  781 LVTCETPQVP AGSFVIGYDY NVHSKIQYNC DPGHIMHGNP VLECLDSGEW SSDAPDCEYI 840
  841 DCGQILPIPY GSHKYVTNTT YVGSEVVFSC SQSHKLSGVV KRQCLESAVW SDVSPKCEEI 900
  901 RCTEPRLATH SLLSVTGNDR MYGRTLIRTA DSTQNTAQTY KIGALAKYRC ERGYKMVGEA 960
  961 LATCTDSGQW SGIIPDCVYV ECGAPENITN GKVTLATNAT YYGAAVLYEC NVNFKLNGVS1020
 1021 RRLCTEHGNW SHEAPECVEV VCDMPNINEN LIVEAGTRAV GSVATFKCLK GRTMIGNDTR1080
 1081 ICQKNGKWAG KSPTCRPVDC GRPLAIENGR VIVVNDSTLY GGSAEYHCIP NYNRIGQYLR1140
 1141 KCTEDGAWSG KQPHCELAAV EGPETSELGT GVGIGATIIV ALLVVFGLIF LYRNKARPVK1200
 1201 NTENVQAAET KDERNAAVMS YSTLEANNRM HMDNNPSAAT FNTFQGGVGR NNTGGGGVGG1260
 1261 AAGAANGERL TNNRSENIYD QIPNEQFYDA PYEMRSNDEV YEPEPVASNV ITINGISCKS1320
 1321 DSITALKRFN KKSEPTWLFV TGGRAVNIMF GTDVPKLMSL LGKELEKTMQ KAPRLVTYGI1380
 1381 DELQPIEVEQ LRVKNEATDL VERIEREARE KKQLDYLTYV TDTILENIPD IGVTVFGPQV1440
 1441 NRDMFKKLQE PAEPLKMQCK DRKVIQVSAE QFDIVNFACK NPLPHDVIEQ LDGKELLMCF1500
 1501 WKIDETVGSV PNVLGAYAHE LTKERVAPPN EEFDEEHVIP PIISPMKVKV EVKLEEGEEW1560
 1561 VEEISSEEDT KKYMAKPKVK SIINFTEDAV AVDDEGDDLA GEEEGSEEDL PELDIRQSMA1620
 1621 NLGIDLDLDL DLDDSGEEEE EVVEEVIAKP LIRTRTVKMP PVWVPSNRRT HAALVYMFFR1680
 1681 SQTSGFLPPD PKPEPPHVIM AFDASKRRDI LSVVDRHKSE VPAYGFFTSD DPDETRLLAT1740
 1741 STDRYDKSGE ISPSDKIVLK VTKVQSNMML SLVSYGPSYV SPNVTAGREE GLKFFAEGYK1800
 1801 QESEVPEKDD DKKKKRKVLF WLTNILRFPL TFLSCCRARR LKKIMSGSRV MYQSHLQRKQ1860
 1861 RRPRKKHRHH PKAPKEKQHQ AKHPQAKHPQ AKHLQAKHPQ AMHPQARPQL RPRERRLLRL1920
 1921 QRQPRVRRLR LQLRQRARPL LRRRKGQHLL KLRQHRKHHK KPPHQRRKRP QRHPKKKQHR1980
 1981 PRNQHLRRHP HQRPHPSQLQ SQLRRQLQSP RRLRKLLQLN NKFVINLNSL Y

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