YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643379\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEAFLDVA NQVIKLKMFP FFDIAHSLLA ALAVREDLGA NAQAFSRKHP LACWLSTMLV  60
   61 IFAGGMVANG LLGEPILAPL KNTGQLLVGT AVWYVVFYTP FDIGYKVAKF LPVKIVASAM 120
  121 KEIYRAKKVY DGVGHAAKLY PNAWIIMIII GTLKGNGAGF TKLIERLIRG AWTPTAMEFM 180
  181 QPSFYTKASL LASIIFVLDK KTDWISAPHA LVYFGIVIFL VYFKLSSILL GIHDPFLPLE 240
  241 NLGCAIFFGG IWDSLAKILG RGQAKDGDSK DVKKNN

Type	Start	End	Confidence
Cytoplasmic	1	50	0.78
Transmembrane Helix	51	72	0.92
Non-Cytoplasmic	73	85	0.66
Transmembrane Helix	86	105	0.59
Cytoplasmic	106	139	0.52
Transmembrane Helix	140	164	0.58
Non-Cytoplasmic	165	178	0.38
Transmembrane Helix	179	198	0.45
Cytoplasmic	199	209	0.65
Transmembrane Helix	210	230	0.87
Non-Cytoplasmic	231	236	0.61
Transmembrane Helix	237	256	0.72
Cytoplasmic	257	276	0.78