YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643318\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.91
Transmembrane Helix	41	62	0.85
Non-Cytoplasmic	63	82	0.88
Transmembrane Helix	83	105	0.87
Cytoplasmic	106	112	0.88
Transmembrane Helix	113	135	0.90
Non-Cytoplasmic	136	142	0.67
Transmembrane Helix	143	164	0.92
Cytoplasmic	165	172	0.91
Transmembrane Helix	173	194	0.92
Non-Cytoplasmic	195	201	0.77
Transmembrane Helix	202	224	0.90
Cytoplasmic	225	455	0.99
Transmembrane Helix	456	475	0.87
Non-Cytoplasmic	476	490	0.75
Transmembrane Helix	491	511	0.91
Cytoplasmic	512	523	0.80
Transmembrane Helix	524	541	0.97
Non-Cytoplasmic	542	548	0.72
Transmembrane Helix	549	571	0.82
Cytoplasmic	572	584	0.76
Transmembrane Helix	585	605	0.89
Non-Cytoplasmic	606	611	0.73
Transmembrane Helix	612	631	0.93
Cytoplasmic	632	648	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSNLTDKN HTNVYNVTTK PKKPKRRDKS DLGPDFVAPD GGWGWVVCLA AGLNNFFLFP  60
   61 ALQQYGLIYR VRMHGLGFDA KQTTTIVNVV MAVSSLVGIV NGAMFRRFTF RQVALTGTIL 120
  121 GFSGIFLTAF CTTFWQYIVC LSAIYGIGLG LAMAATSLAV NTYFKQRRRR ATGFSWTITG 180
  181 LGPIFFPYVS TWLLGFYGAQ GTILIYSGIA MNAVLCALTL QPVLRHVKKP KTASTEGLDS 240
  241 AKDHPETAEA NGNLLTPGSD PWIDYECKYC QYQKRAKRGI FSSQYLFNVD DPERPGYEIT 300
  301 EPGTPMLARA NDGWFGSKLS LTADQGTGGA RYRTRRELMR QVSSRSRENL ERLETSRTGD 360
  361 ETQEQGLYKP NYFNREREDQ ERYTSKTSVY SKSGQEELLR CTCAEDKALL QKTAEAMRLE 420
  421 QMDDQALQAE EDEAMSRLTF FQKVSKFFDL DLLRDFTFVN LAVGMSIMMF GEMNFSVLTP 480
  481 FILNSFGYSD TQISLVMSLL ACMDISVRFL APLALEKVKL DNRVLFAFGI LCIAVGRVVV 540
  541 AFTNSYEVMI GVFLLIGFGK GFRTIFSPLI IPSYVPLNRL PAASGLQLIF NTMFSFAMGP 600
  601 LLGIITEAFG YAATIHSINF LTAMALLLWL TESIVRRILK RPSKGLGQ