YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643260, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPVDSMSAF RYHWQIWRVM GMHPADPQTL WGRHYTLYGI VWNAFFRLGM ALSLVVNFLL  60
   61 STSLESFCES LSVAVPHTVA NLKVFFLWRM RQQILQTHPI LHHLDGRIGS LAEKQSILEG 120
  121 IDRAYFTFIS FLRAIIFILA VGILILCLSS DRPLLYPSWM PWNYKDSSFT VYAMTVCLHS 180
  181 VGIIENALLV CNVDTYPGSY LNMLAAHTQA LAHRVSRLGY DPRLTRSQAC DRLRSCILDH 240
  241 QIIMNLFKSL EHSLSMSCFL QFASTAIAQC ATCFFVIFVS VGTMQSVNMI FLFLVFTTQT 300
  301 LLLCSSAELV RHEGENLIKA IYDCNWLDQS VEFRRMLLLM LARSQRPMIL RAGLIIPVQM 360
  361 STFMVVCKGA YTMLTLLREV DNSEVA

Type	Start	End	Confidence
Cytoplasmic	1	38	0.67
Transmembrane Helix	39	61	0.79
Non-Cytoplasmic	62	69	0.46
Transmembrane Helix	70	87	0.40
Cytoplasmic	88	128	0.64
Transmembrane Helix	129	149	0.92
Non-Cytoplasmic	150	168	0.62
Transmembrane Helix	169	190	0.70
Cytoplasmic	191	257	0.87
Transmembrane Helix	258	279	0.92
Non-Cytoplasmic	280	288	0.63
Transmembrane Helix	289	310	0.81
Cytoplasmic	311	348	0.91
Transmembrane Helix	349	372	0.77
Non-Cytoplasmic	373	386	0.81