YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125981851, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPEMMKMS EFRLLNQTRS DRQNGATPPP ARQGGSHCPI AIRNSWYCCF PGRVVQPAGK  60
   61 SQTTDTERAS KLKLGSDFLG RGDKTPIRSD PIQAKAETFD GQLYAQLSSS SRIGQGAGES 120
  121 FRGTGIIVRI PLIAEMAQRQ GALVLTDIGW DEMIANASRQ CLITWEVSGG GLIGNLLTDT 180
  181 SRAELSLWPD TVYNIQVTCK HKLTGMMRRS KKLNVDTRQL VGTTTEGNTS TATTTSTERG 240
  241 QPKMHAHLHP TDRVYIISAL PTTSQLSGVV YPAFGALAFF LSLLVMFLFL RPQRKRFLLD 300
  301 ADATEADTAT LIGGHRSSSR NSLDSSTLHV

Type	Start	End	Confidence
Non-Cytoplasmic	1	267	0.96
Transmembrane Helix	268	290	0.93
Cytoplasmic	291	330	0.97