YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125981823, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDVFGSVKG LLKIDQVCID NNVFRMHYKA TVIILIAFSL LVTSRQYIGD PIDCIVDEIP  60
   61 LGVMDTYCWI YSTFTVPERL TGVTGRDVVQ PGVGSHVEGK DAVKYHKYYQ WVCFVLFFQA 120
  121 ILFYVPRYLW KSWEGGRLKM LVMDLNSPIV NDECKNDRKK ILVDYFIGNL NRHNFYAFRF 180
  181 FVCEALNFVN VIGQIYFVDF FLDGEFSTYG SDVLKFTEME PDERIDPMAR VFPKVTKCTF 240
  241 HKYGPSGDVQ KFDGLCVLPL NIVNEKIYVF LWFWFIILSI LSGISLIYRI AVVAGPKLRH 300
  301 LLLRARSRLA ESEEVEQVAN KCNIGDWFLL YQLGKNIDPL IYKEVISDLS REMVDDEQSA 360
  361 HKRPFDA

Type	Start	End	Confidence
Cytoplasmic	1	29	0.80
Transmembrane Helix	30	48	0.65
Non-Cytoplasmic	49	107	0.81
Transmembrane Helix	108	130	0.77
Cytoplasmic	131	175	0.88
Transmembrane Helix	176	198	0.79
Non-Cytoplasmic	199	269	0.93
Transmembrane Helix	270	292	0.92
Cytoplasmic	293	367	0.93