YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643188, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.72
Transmembrane Helix	42	62	0.83
Non-Cytoplasmic	63	68	0.64
Transmembrane Helix	69	91	0.74
Cytoplasmic	92	138	0.88
Transmembrane Helix	139	162	0.70
Non-Cytoplasmic	163	182	0.81
Transmembrane Helix	183	215	0.66
Cytoplasmic	216	280	0.92
Transmembrane Helix	281	303	0.92
Non-Cytoplasmic	304	311	0.77
Transmembrane Helix	312	333	0.89
Cytoplasmic	334	465	0.58
Transmembrane Helix	466	488	0.90
Non-Cytoplasmic	489	511	0.53
Transmembrane Helix	512	526	0.66
Cytoplasmic	527	561	0.75
Transmembrane Helix	562	585	0.88
Non-Cytoplasmic	586	685	0.72
Transmembrane Helix	686	707	0.83
Cytoplasmic	708	717	0.67
Transmembrane Helix	718	739	0.64
Non-Cytoplasmic	740	799	0.61
Transmembrane Helix	800	821	0.89
Cytoplasmic	822	826	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSFHRLLRR DQPLRSYFFA VPRLSLDVMG YWPMGDDLPV RAIVHFVILS IGVVTELHAG  60
   61 FMFLQNAQIT LALETLCPAG TSAVTLLKML LMLRYRRDLT NVWRQLQRML FDAGLNRPEQ 120
  121 KAIIHDNSVL AARINFWPLS AGFFTCTTYN LKPLLIAFIL YLQDPDQELP WNTPFNMTMP 180
  181 KVLLAAPFFP LTYAFIAYTG YVTIFMFGGC DGFYFEFCVH ISSLFQSLQE ETRAIFRPFE 240
  241 EYLKLTPAQC ARLELQLRGL IIRQNSVFEL ISFFRKRYTV ITLAHFVSAA LVIGFSICNL 300
  301 LTVGNNGLGA LLYVAYTVAA LSQLLVYCYG GTLVAESVSM PQKRSSLIIM VILQSFELSR 360
  361 VAASCPWSLG APRQRRVILL LILRSQRAPT MAVPFFSPSL NTFASYGLAA GRLKMSAAEE 420
  421 HEPKESFWER HEFKFYKYGH IYAVIYGQVV IDYVPQQPMR RGLKTVLIAY SHLLSLILIV 480
  481 VLPGYFVYHF RTLTETHDRR MQLMLYVSFA NTAIKYATVI VTYVANTVHF EAINYRCTVQ 540
  541 RQRLETAFVG APKQPKRSFE FFMYFKFCLI NLMMLVQVAG IFALYEAADG PSVSQVRLHF 600
  601 AIYAFVLWNY TENMADYFYF VNGSVLKYYR QLHLQLVSLR RQLGGLRPGG MLMEHCCRLS 660
  661 DRLGELRQRF GEIHDLYSES FQMHQFQLLG LVLATLINNL TNFYAIFNML AKQSLEEISF 720
  721 PIVIGSVYAT GFYIDTYIVT LLNEHIKQEL EGFALTMRTF AEPPSTVEQR LTQEIEYFSL 780
  781 ELLKCRPPML CGLLNFDRRL IYLIAVTAFC YFITLVQFDL YLRKSS