YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTFKNMKL AHFGGGGAGI VGGSGGAGGN IGGAFGMAIS GGVAGKMPVN GSGSGKGASA  60
   61 AAAAESEVFL TPSGVIIPLI RTRDMPKKLP TMSAALQRPS DDHLSAEDLD AVQLELEQLL 120
  121 SNVALRARVL KAEYDSVDKD EKRNDRRKFD RVPGSPPCTS NNAMLNAMLG IGVGGASGGL 180
  181 GSPSGVSSSM AKRKRDEPTG VRKKHSSMTI LKGGLGPSGS SRHSKNSPMA VHTDDSMDFL 240
  241 PSSNLILPML PQLPKLAMPK NDMPNKFWLS VEPYCMPVTN EDLRLIDDLL EQYRGPLVPP 300
  301 VPTLGPHYST VWALEDMKAL QPGGSRVKSQ NASAMVKKGD GMVEESITGP LTQRLVTALM 360
  361 EESLLTLPSE QAAVGEHSNS TTSSSNDNSH SHSHSHSHLS SANSGAPAAI GNFRPLSMLK 420
  421 HGVGIEQRLK KELLENGLMD ASDCAPPEDT DDVLHEIKRV TAEISTVSTF NSEELKRLRL 480
  481 AASDEIKRIE LKRKLDMIDT EILECYKRML QYRAKRKGHT VEEKQEILRL TKEQRILADQ 540
  541 LERMSILPPL GPSSSSM

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	39	0.78
Non-Cytoplasmic	40	59	0.83
Transmembrane Helix	60	80	0.71
Cytoplasmic	81	162	0.78
Transmembrane Helix	163	181	0.73
Non-Cytoplasmic	182	557	0.85